Publications
Since 2017 @ GRAST, Chungnam National University
Bold : Lab members, Kim JY : Principal Investigator (PI) of the lab.
17.
Choi KM, Kim B, Lee SM, Han J, Bae HS, Han SB, Lee D, Ham IH, Hur H, Kim E, Kim JY. (2024) Characterization of gastric cancer-stimulated signaling pathways and function of CTGF in cancer-associated fibroblasts. Cell Commun Signal 22, 8. [Impact factor : 8.4] 공동주저자 : 최경민, 김보람
16.
Bang S, Qamar AY, Fang X, Kim H, Han A, Kang H, Cha D, Shim J, Kim JH, Choi K, Yun SH, Lee H, Park HS, Kim SI, Kim JY, Saadeldin IM, Lee S, Cho J. (2023) Effects of extracellular vesicles derived from steroids-primed oviductal epithelial cells on porcine in vitro embryonic development. Theriogenology ;209:213-223. [Impact factor : 2.923]
15.
Masud M.A., Kim JY, Kim E. (2023) Effective dose window for containing tumor burden under tolerable level. NPJ Syst Biol Appl 23; 9 (1). [Impact factor : 4.671]
14.
Masud M.A., Kim JY, Kim E. (2023) Modeling the effect of acquired resistance on cancer therapy outcomes. Comput Biol Med 162 107035. [Impact factor : 6.698]
13.
Park SG, Ji MJ, Ham IH, Shin YH, Lee SM, Lee CH, Kim E, Hur H, Park HM, Kim JY. (2022) Secretome analysis reveals reduced expression of COL4A2 in hypoxic cancer-associated fibroblasts with a tumor promoting function in gastric cancer. J Cancer Res Clin Oncol (in press). [Impact factor : 4.32] 주저자 : 박서규
12.
Kim E*, Hwang EJ, Lee J, Kim DY, Kim JY*, Kim DW*. (2022) Patient-specific molecular response dynamics can predict the possibility of relapse during the second treatment-free remission attempt in chronic myelogenous leukemia. Neoplasia 32:100817 (* : co-corresponding authors). [Impact factor : 6.02]
11.
Masud MA, Kim JY, Pan CH, Kim E. (2022) The impact of the spatial heterogeneity of resistant cells and fibroblasts on treatment response. PLoS Comput Biol 18(3); e1009919. [Impact factor : 4.428]
10.
Lee SJ, Choi KM, Bang G, Park SG, Kim EB, Choi JW, Chung YH, Kim J, Lee SG, Kim E*, Kim JY*. (2021) Identification of nucleolin as a novel AEG-1-interacting protein in breast cancer via interactome profiling. Cancers 13, 2842 (* : co-corresponding authors). [Impact factor : 6.126] 주저자 : 이성재
9.
Yoon HS, Choi SH, Park JH, Min JY, Hyon JY, Yang Y, Jung S, Kim JY, Kim ND, Lee JH, Han EH, Chi SG, Chung YH. (2021) A novel protein-protein interaction between RSK3 and IκBα and a new binding inhibitor that suppresses breast cancer tumorigenesis. Cancers 13, 2973. [Impact factor : 6.126]
8.
Kim SH, Ha CW, Lim H, Jang S, Namkoong S, Hong S, Kim YK, Kim JY, Lee SR, Sohn EH. (2021) Aqueous extract of Phragmites communis rhizomes attenuates phototoxicity in skin cells. Mol Cell Toxicol 17. 29-40. [Impact factor : 1.660]
7.
Choi KM, Cho E, Bang G, Lee SJ, Kim B, Kim JH, Park SG, Han EH, Chung YH, Kim JY, Kim E*, Kim JY*. (2020) Activity-based protein profiling reveals potential dasatinib targets in gastric cancer. Int J Mol Sci 21(21):9276 (* : co-corresponding authors). [Impact factor : 5.923] 공동주저자 : 최경민, 조은지
6.
Kim E, Kim JY, Lee JY. (2019) Mathematical modeling of p53 pathways. Int J Mol Sci 20(20):5179. [Impact factor : 5.923]
5.
Choi KM, Zissler A, Kim E, Ehrenfellner B, Cho E, Lee SI, Steinbacher P, Yun KN, Shin JH, Kim JY, Stoiber W, Chung H, Monticelli FC, Kim JY*, Pittner S*. (2019) Postmortem proteomics to discover biomarkers for forensic PMI estimation. Int J Legal Med 133(3): 899-908 (* : co-corresponding authors). [Impact factor : 2.22] 주저자 : 최경민
4.
Choi KM, Cho E, Kim E, Shin JH, Kang M, Kim B, Han EH, Chung YH, Kim JY. (2018) Prolonged MEK inhibition leads to acquired resistance and increased invasiveness in KRAS mutant gastric cancer. Biochem Biophys Res Commun 9;507(1-4):311-318. [Impact factor : 3.575] 주저자 :최경민
3.
Kim E, Kim JY, Smith MA, Haura EB, Anderson ARA. (2018) Cell signaling heterogeneity is modulated by both cell-intrinsic and -extrinsic mechanisms: An integrated approach to understanding targeted therapy. PLoS Biol 16(3):e2002930. [Impact factor : 8.029]
2.
Park SY, Phorl S, Jung S, Sovannarith K, Lee SI, Noh S, Han M, Naskar R, Kim JY*, Choi YJ*, Lee JY*. (2017) HDAC6 deficiency induces apoptosis in mesenchymal stem cells through p53 K120 acetylation. Biochem Biophys Res Commun 494(1-2):51-56 (* : co-corresponding authors). [Impact factor : 3.575]
1.
Kim JY, Lee JY. (2017) Targeting tumor adaption to chronic hypoxia: Implications for drug resistance, and how it can be overcome. Int J Mol Sci 18(9). [Impact factor : 5.923]
Manuscripts in preparation
1.
Choi KM et al. Proteomic characterization of MASTL function in gastric cancer.
주저자 : 최경민
2.
Kim E et al. Proteomic characterization of nucleolin targeting aptamer in breast cancer.
주저자 : 김은비
3.
Shin YH, Choi JW et al. Secretome analysis of EGFR TKI resistant lung cancer.
공동주저자 : 신윤희, 최진웅
4.
Park SW, Shin JH et al. Differential glycosecretome analysis of gastric cancer fibroblast. 주저자 : 신종환
Before 2017
1.
Kim JY, Welsh EA, Fang B, Fumi K, Koomen JM, Haura EB. (2016) Phosphoproteomics reveals MAPK inhibitors enhance MET- and EGFR-driven AKT signaling in KRAS-mutant lung cancer. Molecular Cancer Research (10):1019-1029 - Featured in highlights of this issue.
2.
Kim JY*, Stewart PA*, Borne AL, Fang B, Welsh EA, Chen YA, Eschrich SA, Koomen JM, Haura EB. (2016) Activity-based proteomics reveals heterogeneous kinome and ATP-binding proteome responses to MEK inhibition in KRAS mutant lung cancer. Proteomes 4 (16) (* : co-first author).
3.
Li J, Fang B, Kinose F, Bai Y, Kim JY, Chen YA, Rix U, Koomen JM, Haura EB. (2016) Target Identification in Small Cell Lung Cancer via Integrated Phenotypic Screening and Activity-Based Protein Profiling. Molecular Cancer Therapeutics 15(2):334-342.
4.
Bai Y*, Kim JY*, Watters JM, Fang B, Kinose F, Song L, Koomen JM, Teer JK, Fisher K, Chen YA, Rix U, Haura EB. (2014) Adaptive responses to dasatinib-treated lung squamous cell cancer cells harboring DDR2 mutations. Cancer Research 74(24):7217-7228 (* : co-first author).
5.
Kim JY, Welsh EA, Oguz U, Fang U, Bai Y, Kinose F, Bronk C, Rix LLR, Beg AA, Eschrich S, Koomen J, Haura EB. (2013) Dissection of TBK1 signaling via phosphoproteomics in lung cancer cells. Proc Natl Acad Sci U S A 110 : 12414-12419.
6.
Kim JY, Beg AA, Haura EB. (2013) Non-canonical IKKs, IKKε and TBK1, as novel therapeutic targets in the treatment of non-small cell lung cancer (NSCLC). Expert Opin Ther Targets 17 : 1109-1112.
7.
Li J, Bennett K, Stukalov A, Fang B, Yoshida T, Okamoto I, Kim JY, Song L, Rawal B, Schell M, Bai Y, Grebien F, Qian X, Rix U, Eschrich S, Colinge J, Koomen J, Superti-Furga G, Haura EB. (2013) Perturbation of the cancer-mutated EGFR interactome identifies vulnerabilities and resistance mechanisms. Molecular Systems Biology 9 : 705.